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AI Protocol Creation Platform

Create structured, review-ready protocols
faster with controlled AI.

ProtocolGen generates structured, review-ready protocol drafts from study summaries using template-governed AI, curated clause libraries, ICH M11-aligned structure, TransCelerate CPT-style content organization, collaboration workflows, and human-guided validation.

ICH M11-Aligned Structure TransCelerate CPT-Style Organization Curated Clause Libraries Template-Governed AI Drafting Human-Guided Validation
Protocol Drafting Workflow
Study Summary Inputs
Study Type Phase & Design Endpoints Population
🤖
ProtocolGen AI Engine
ICH M11 · Clause Library · Template-Governed
Draft Protocol Sections
Objectives & Endpoints
Study Design & Population
Inclusion / Exclusion Criteria
Statistical Methods & Sample Size
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Multi-Stakeholder Review
Finalized Protocol

Protocol creation is still a manual, knowledge-dependent bottleneck.

Regulated research organizations spend significant time and effort creating protocols — even for study types they have executed dozens of times before.

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Repetitive, Manual Drafting

Protocol sections are rewritten from scratch for each study — even when the design, methods, and structure are nearly identical to previous protocols executed by the same team.

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Inconsistency Across Studies

Different writers use different wording for similar clauses — creating inconsistency across the organization's protocol library, increasing review effort, and undermining institutional standards.

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Fragmented Review Cycles

Multiple stakeholders review protocols sequentially with inconsistent inputs — increasing revision rounds, causing version confusion, and delaying study activation timelines.

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Design Assumption Gaps

Critical study design decisions — sample size assumptions, statistical methods, endpoint definitions — are sometimes made inconsistently or left under-specified in initial protocol drafts.

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Institutional Knowledge Loss

When experienced protocol writers leave, their knowledge of regulatory nuances, organizational preferences, and proven clause language leaves with them — creating avoidable dependency risk.

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Finalization Delays

Protocol finalization — resolving reviewer comments, tracking open items, managing version history — is managed manually, creating delays at a critical point in the study timeline.

Six capabilities. One structured protocol drafting system.

ProtocolGen turns study summaries into structured, review-ready protocol drafts — using controlled AI, curated clause libraries, and governed workflows rather than open-ended generation.

01
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Study Summary Intake

Enter key study parameters — study type, phase, therapeutic area, design, endpoints, population, statistical approach — as structured inputs to guide AI-assisted drafting in context.

02
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Structured AI Drafting

AI generates structured protocol section drafts grounded in approved templates and clause libraries — not open-ended text generation — ensuring every draft follows organizational standards.

03
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Curated Clause Library

Select, adapt, and reuse pre-built protocol clauses curated from organizational standards — for inclusion/exclusion criteria, PK sampling, randomization, endpoints, and more.

04
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Compliance & Consistency Checks

Automated checks flag structural gaps, missing required sections, and clause inconsistencies across the draft — supporting human reviewers in identifying issues before formal review cycles.

05
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Collaboration & Review

Built-in multi-stakeholder review workflows with inline commenting, markup, version comparison, and role-based approval stages — for controlled, accountable protocol review cycles.

06

Finalization Workflow

Resolve reviewer comments, close open items, lock approved versions, and generate finalized protocol documents with complete version history and audit trail for regulatory and sponsor submission.

Designed to align with recognized protocol standards.

ProtocolGen is designed to support internationally recognized protocol development frameworks — while remaining fully configurable to your organization's own templates and requirements.

ICH M11
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ICH M11-Aligned Structure

International guidance for clinical study protocol content and organization — for globally consistent, regulated trial development.

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Section Taxonomy & Ordering
Protocol sections structured and ordered in alignment with ICH M11 guidance — mandatory and conditional sections supported.
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Protocol Synopsis Generation
Structured synopsis with objectives, design, population, and endpoints — consistent with ICH M11 synopsis format expectations.
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Consistent Section Terminology
Standardized section names and terminology maintained across the organizational protocol library for cross-study consistency.
Designed to support alignment with ICH M11 guidance. Does not constitute certification or regulatory approval.
TransCelerate CPT
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TransCelerate CPT-Style Organization

Modular, clear protocol content structures drawn from TransCelerate Common Protocol Template principles — reducing ambiguity across review teams.

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Modular Content Organization
Protocol content structured as reusable, clearly scoped modules — applicable across study types and review functions.
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Reusable Content Modules
Core protocol content modules can be selected and adapted across studies — reducing drafting effort and improving cross-functional review consistency.
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Consistent Format for Review
Standardized section structure and scope definitions help multi-disciplinary review teams navigate and evaluate protocol content efficiently.
Designed to support TransCelerate CPT-style content principles. Implementation varies by study type and organizational template.
Org Templates
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Organization-Specific Templates

Fully configurable to your approved protocol templates, clause libraries, house style, and study-type standards — every draft reflects your organization.

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Custom Template Configuration
Protocol templates configured by study type during implementation — encoding your organizational structure, format, and content standards.
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Approved Clause Library Curation
Organization-approved clause libraries curated and maintained — covering inclusion/exclusion criteria, PK, randomization, endpoints, and more.
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SOA, CRF & Ancillary Links
Schedule of Assessments, CRF references, and ancillary document connections configured to your study-type workflow and operational standards.
Template configuration performed during implementation to reflect your organization's specific standards and review requirements.

Configurable for five major study design environments.

ProtocolGen adapts to your study type through configurable templates, curated clause libraries, and study design logic tailored to the regulatory and scientific requirements of each research environment.

Study Type 1
⚗️

BA/BE & Early Phase

Bioequivalence and Phase I protocols share a high degree of structural similarity across studies — making them ideal candidates for template-driven AI-assisted drafting at scale. ProtocolGen helps BA/BE centers and Phase I units standardize structure, reuse approved clause libraries, and reduce repetitive drafting effort across high-volume protocol production cycles.

  • BA/BE-specific template library with design logic parameters
  • Inclusion/exclusion, PK sampling, and randomization clause reuse
  • Consistency across concurrent high-volume study protocols
  • Structured first draft with reduced revision cycle burden
For: BA/BE Centers · Phase I Units · CROs with High Protocol Volume
Study Type 2
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Late Phase Clinical Studies

Late phase protocols involve complex scientific design, multi-site operational requirements, and diverse regulatory expectations — creating significant drafting and review effort. ProtocolGen provides structured study design parameter inputs, endpoint-specific clause libraries, and multi-stakeholder review workflows for complex protocol development.

  • Phase II/III study design logic with endpoint parameters
  • Multi-site operational section structuring and cross-reference
  • Endpoint-specific clause library selection and adaptation
  • Multi-stakeholder review and approval workflow support
For: Pharma Protocol Teams · CROs · Academic Research Centers
Study Type 3
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RWE & Observational Studies

Real-world evidence and observational study protocols require structured designs that reflect complex data sources, diverse populations, and methodological rigor. ProtocolGen supports registry protocols, RWE study designs, and observational research structures with configurable templates and design logic parameters.

  • RWE and registry protocol templates with data source parameters
  • Observational design logic (cohort, cross-sectional, case-control)
  • Confounder handling and outcome measurement section generation
  • Structured methodology sections for publication-ready protocols
For: Pharma HEOR Teams · Academic Centers · Registry Operators
Study Type 4
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Consumer, Nutraceutical & Claims Studies

Consumer research and nutraceutical claims studies require structured, scientifically rigorous protocols — but typically sit outside traditional pharma protocol processes. ProtocolGen provides configurable templates for consumer study designs, observational registry protocols, and claims substantiation study structures.

  • Consumer study design templates with configurable parameters
  • Claims substantiation and efficacy study clause libraries
  • Outcome measurement and data collection section generation
  • Defensible protocol structure for regulatory and claims support
For: Consumer Research Organizations · Nutraceutical Companies · FMCG R&D Teams
Study Type 5
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Medical Device & Diagnostic Studies

Medical device clinical evaluation protocols and diagnostic performance study designs require specific structural and content standards aligned with device regulatory frameworks. ProtocolGen supports device study protocol structures including clinical evaluation, post-market clinical follow-up, and diagnostic accuracy study designs.

  • Medical device clinical evaluation protocol templates
  • PMCF and post-market surveillance protocol structures
  • Diagnostic accuracy study design clause libraries
  • Device-specific safety and performance endpoint sections
For: Medical Device Companies · IVD Manufacturers · Device CROs

Built for the teams who create, review, and manage research protocols.

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Medical Writers
Medical Writing Organizations & CROs

ProtocolGen provides medical writers with a structured starting point for protocol drafts — reducing time spent on blank-page drafting and enabling focus on scientific accuracy, regulatory language, and review quality.

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Clinical Research Teams
CROs · Academic Centers · Phase I Units

Clinical research teams use ProtocolGen to initiate study protocols faster — using organizational templates, approved clause libraries, and study design logic to generate structured drafts for immediate review.

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CRO Protocol Operations
Contract Research Organizations

CROs with high-volume protocol production — particularly BA/BE and Phase I-focused organizations — use ProtocolGen to standardize draft quality, reduce per-protocol effort, and manage review workflows at scale.

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Pharma Protocol Teams
Pharmaceutical Companies

Pharma clinical development and protocol teams use ProtocolGen to maintain organizational standards, preserve institutional knowledge in templates, and accelerate complex late phase protocol development cycles.

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Regulatory Affairs
Regulatory Teams & Consultancies

Regulatory professionals use ProtocolGen to review protocol structure and content against ICH M11 and organization-specific standards — with structured outputs that simplify regulatory review and submission preparation.

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Biostatistics
Biostatistics & Statistical Programming

Biostatisticians review AI-generated statistical methodology sections and sample size rationale in ProtocolGen drafts — contributing to an integrated protocol review workflow with clear accountability and version tracking.

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Consumer Research Teams
FMCG · Nutraceutical · Consumer Health

Consumer research and product development teams use ProtocolGen to create structured, scientifically rigorous protocols for claims substantiation, product efficacy, and observational consumer studies.

Designed outcomes for protocol-intensive organizations.

ProtocolGen is designed to help organizations reduce the cost, effort, and risk associated with protocol development — without replacing the qualified professionals who make final decisions.

Structured first drafts faster — AI-generated starting points reduce blank-page effort and help writers focus on scientific and regulatory quality rather than initial document construction.
Improved clause consistency across studies — Curated clause libraries and organizational templates help maintain consistent language and structure across all protocols in your organization's portfolio.
Preserved institutional knowledge — Approved clause libraries and templates encode organizational standards, design preferences, and regulatory learnings — reducing dependency on individual expertise.
More efficient review cycles — Structured drafts with automated gap checks and built-in reviewer workflows help reduce revision rounds by improving the quality of drafts entering formal review.
Scalable protocol production — Organizations running high volumes of similar studies — BA/BE centers, Phase I units, consumer research groups — can standardize and scale protocol output more effectively.
Governed AI with full audit trail — Every draft, clause selection, reviewer comment, version change, and approval decision is tracked — providing a complete record of the protocol development process.

Turn study summaries into structured protocol drafts.

Book a focused ProtocolGen demo tailored to your study type — and see how template-governed AI can help your team produce better first drafts, maintain organizational standards, and move through review cycles more efficiently.